NAMD

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NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platfo

http://www.ks.uiuc.edu/Research/namd/

✍: FYIcenter.com

2007-01-26, 10🔥, 0💬

NAMD
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platfo 2007-01-26, ≈10🔥, 0💬

MOIL
MOIL is a molecular modeling software, which is in the public domain, and is written in the group of Ron Elber. Available features, such as energy calculations, minimization and calculations of classical trajectories. Graphic User Interface for a wide ran 2007-01-26, ≈10🔥, 0💬

MOLMOL
MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. 2007-01-26, ≈10🔥, 0💬

NOC
It is a free program for protein structure model-building, visualization, validation and analysis. 2007-01-26, ≈10🔥, 0💬

Rasmol
Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules. 2007-01-26, ≈10🔥, 0💬

Open Babel
Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry. 2007-01-26, ∼9910🔥, 0💬

Reduce
Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met methyls, Asn and Gln sidechain amides, and His rings. B 2007-01-26, ∼9880🔥, 0💬

Molscript
A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations 2007-01-26, ∼9799🔥, 0💬

Raster3D
Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficien 2007-01-26, ∼9523🔥, 0💬

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