Glimmer HMM

🔖

A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolated Markov models for evaluating the coding regions.

http://cbcb.umd.edu/software/glimmerhmm/

✍: FYIcenter.com

2007-01-27, 11🔥, 0💬

Glimmer HMM
A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolated Markov models for evaluating the coding regions. 2007-01-27, ≈11🔥, 0💬

Glimmer
A system for finding genes in microbial DNA, especially the genomes of bacteria and archaea.Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DN 2007-01-27, ≈11🔥, 0💬

pDRAW
pDRAW32 is being developed as a free time hobby project. It is far from finished, but as it has reached a point where it could be helpful for many labs, it is now available to the scientific community. 2007-01-27, ≈11🔥, 0💬

Chromas
It will display and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files which the analysis programs for ALF, Li-Cor and Visible Genetics OpenGene sequencers can create. 2007-01-27, ≈10🔥, 0💬

Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. 2007-01-27, ≈10🔥, 0💬

MUMmer
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. 2007-01-27, ≈10🔥, 0💬

Glimmer M
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programming algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. The d 2007-01-27, ≈10🔥, 0💬

Staden
The Staden Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DNA/protein sequence analysis (spin). 2007-01-27, ∼9821🔥, 0💬

Teverna
Taverna is a tool for creating and running bioinformatics workflows. 2007-01-27, ∼9630🔥, 0💬

All rights in the contents of this web site are reserved by the individual author. FYIcenter.com does not guarantee the truthfulness, accuracy, or reliability of any contents.