GeneTree
GeneTree is an experimental program for comparing gene and species trees.
✍: FYIcenter.com
2007-01-27, 9673🔥, 0💬
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FastA
The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a given sequence. 2007-01-27, ≈11🔥, 0💬
GeneDoc
GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support. 2007-01-27, ≈10🔥, 0💬
FreeTree
Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.) 2007-01-27, ≈10🔥, 0💬
HMMER
A profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. 2007-01-27, ∼9922🔥, 0💬
JalView
Graphical multiple alignment editor. Requires Java Virtual Machine. 2007-01-27, ∼9911🔥, 0💬
JEMBOSS
Jemboss is developed by the EMBOSS team. The software is free and part of the EMBOSS distribution. 2007-01-27, ∼9815🔥, 0💬
Dambe
It is a general-purpose package for DNA and protein sequence phylogenies, and also gene frequencies. 2007-01-27, ∼9760🔥, 0💬
Circle
Infer RNA secondary structure using the comparative method. 2007-01-27, ∼9737🔥, 0💬