HyPhy
It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. HYPHY was designed with maximum flexibility in mind and to that end it incorporates a simple high level programming
✍: FYIcenter.com
2007-01-27, 9060🔥, 0💬
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The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a given sequence. 2007-01-27, ≈10🔥, 0💬
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Mfold is an RNA and DNA folding package. 2007-01-27, ∼9361🔥, 0💬
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Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.) 2007-01-27, ∼9323🔥, 0💬
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PHYLIP is a free package of programs for inferring phylogenies. 2007-01-27, ∼9306🔥, 0💬
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A profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. 2007-01-27, ∼9247🔥, 0💬
GeneDoc
GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support. 2007-01-27, ∼9227🔥, 0💬
JEMBOSS
Jemboss is developed by the EMBOSS team. The software is free and part of the EMBOSS distribution. 2007-01-27, ∼9165🔥, 0💬
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GeneTree is an experimental program for comparing gene and species trees. 2007-01-27, ∼9048🔥, 0💬