Raster3D

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Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficien

http://www.bmsc.washington.edu/raster3d/raster3d.html

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2007-01-26, 9486🔥, 0💬

Cellware
Cellware has been designed to conduct modeling and simulation of gene regulatory and metabolic pathways and also offer an integrated environment for diverse mathematical representations, parameter estimation and optimization. In addition, a user-friendly 2007-01-27, ≈10🔥, 0💬

Swiss-PdbViewer
TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA file) and saving a single frame as a PDB file. 2007-01-26, ≈10🔥, 0💬

Swiss-PdbViewer
Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant 2007-01-26, ≈10🔥, 0💬

VEGA
VEGA was originally developed to create a bridge between most of the molecular software packages only, but in the years, enhancing its features, it's evolved to a complete molecular modeling suite. 2007-01-26, ≈10🔥, 0💬

NOC
It is a free program for protein structure model-building, visualization, validation and analysis. 2007-01-26, ∼9984🔥, 0💬

Rasmol
Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules. 2007-01-26, ∼9963🔥, 0💬

Open Babel
Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry. 2007-01-26, ∼9857🔥, 0💬

Reduce
Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met methyls, Asn and Gln sidechain amides, and His rings. B 2007-01-26, ∼9835🔥, 0💬

Molscript
A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations 2007-01-26, ∼9756🔥, 0💬

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