HyPhy

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It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. HYPHY was designed with maximum flexibility in mind and to that end it incorporates a simple high level programming

http://www.hyphy.org

✍: FYIcenter.com

2007-01-27, 9635🔥, 0💬

MFold
Mfold is an RNA and DNA folding package. 2007-01-27, ∼9803🔥, 0💬

FreeTree
Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.) 2007-01-27, ∼9785🔥, 0💬

GeneDoc
GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support. 2007-01-27, ∼9774🔥, 0💬

HMMER
A profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. 2007-01-27, ∼9715🔥, 0💬

PHYLIP
PHYLIP is a free package of programs for inferring phylogenies. 2007-01-27, ∼9666🔥, 0💬

JalView
Graphical multiple alignment editor. Requires Java Virtual Machine. 2007-01-27, ∼9666🔥, 0💬

HyPhy
It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. HYPHY was designed with maximum flexibility in mind and to that end it incorporates a simple high level programming 2007-01-27, ∼9636🔥, 0💬

JEMBOSS
Jemboss is developed by the EMBOSS team. The software is free and part of the EMBOSS distribution. 2007-01-27, ∼9587🔥, 0💬

Mega3
MEGA is an integrated tool for automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, and testing evolutionary hypotheses. 2007-01-27, ∼9573🔥, 0💬

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