Swiss-PdbViewer

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Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant

http://au.expasy.org/spdbv/

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2007-01-26, 10🔥, 0💬

CytoScape
Cytoscape is a visualization platform for use with molecular interaction networks. Interaction data can be integrated with other state data such as gene expression profiles. The input to Cytoscape includes lists of interaction pairs, and tab/space delimit 2007-01-27, ≈10🔥, 0💬

Swiss-PdbViewer
TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA file) and saving a single frame as a PDB file. 2007-01-26, ≈10🔥, 0💬

Swiss-PdbViewer
Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant 2007-01-26, ≈10🔥, 0💬

E-Cell 3
E-Cell Project is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation. 2007-01-27, ≈10🔥, 0💬

VEGA
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NOC
It is a free program for protein structure model-building, visualization, validation and analysis. 2007-01-26, ≈10🔥, 0💬

Rasmol
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Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry. 2007-01-26, ≈10🔥, 0💬

Reduce
Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met methyls, Asn and Gln sidechain amides, and His rings. B 2007-01-26, ∼9984🔥, 0💬

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