BioEdit

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BioEdit is a full integrated sequence/alignment editor. Performs translations, phylogenetic analysis, clustalw alignments, ABI trace analysis, RNA comparative analysis and BLAST searches.

http://www.mbio.ncsu.edu/BioEdit/bioedit.html

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2007-01-27, 9843🔥, 0💬

Sequin
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissio 2007-01-27, ≈28🔥, 0💬

pDRAW
pDRAW32 is being developed as a free time hobby project. It is far from finished, but as it has reached a point where it could be helpful for many labs, it is now available to the scientific community. 2007-01-27, ≈11🔥, 0💬

FastA
The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a given sequence. 2007-01-27, ≈10🔥, 0💬

MUMmer
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. 2007-01-27, ≈10🔥, 0💬

BioEdit
BioEdit is a full integrated sequence/alignment editor. Performs translations, phylogenetic analysis, clustalw alignments, ABI trace analysis, RNA comparative analysis and BLAST searches. 2007-01-27, ∼9844🔥, 0💬

Staden
The Staden Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DNA/protein sequence analysis (spin). 2007-01-27, ∼9823🔥, 0💬

FreeTree
Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.) 2007-01-27, ∼9700🔥, 0💬

GeneDoc
GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support. 2007-01-27, ∼9661🔥, 0💬

Circle
Infer RNA secondary structure using the comparative method. 2007-01-27, ∼9495🔥, 0💬

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