Garlic

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It is a free molecular visualization program, protein structure, DNA structure, PDB, molecular rendering, biological macromolecule, unix, linux, free software download, open source software.

http://garlic.mefos.hr/garlic-1.0/

✍: FYIcenter.com

2007-01-26, 10🔥, 0💬

Cn3D
Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service. 2007-01-26, ≈10🔥, 0💬

Garlic
It is a free molecular visualization program, protein structure, DNA structure, PDB, molecular rendering, biological macromolecule, unix, linux, free software download, open source software. 2007-01-26, ≈10🔥, 0💬

GROMACS
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 2007-01-26, ≈10🔥, 0💬

GRAMM
GRAMM is a program for protein docking. To predict the structure of a complex, it requires only the atomic coordinates of the two molecules (no information about the binding sites is needed). The program performs an exhaustive 6-dimensional search through 2007-01-26, ≈10🔥, 0💬

Easy Winbabel
It's a program for chemists and physicists dealing with molecular modeling. It uses the well known BABEL program as basis and provides a windows interface. The zip file includes BABEL ver 1.6. 2007-01-26, ≈10🔥, 0💬

Dang
Dang reads coordinates from a Protein DataBank (PDB) molecular structure file and generates a table of several useful geometric measurements for each residue or base. In its most basic form, it writes out dihedral angles (phi, psi, chi) hence the name. Th 2007-01-26, ∼9832🔥, 0💬

Ghemical
Ghemical is a computational chemistry software package released under the GNU GPL. Geometry optimization, molecular dynamics and some visualization tools are currently available. If quantum-mechanical calculations are needed, Ghemical can be directly link 2007-01-26, ∼9814🔥, 0💬

EDPDB
EdPDB is a program to manipulate and extract information from Brookhaven Protein Databank (PDB) format coordinate file(s) of three-dimensional protein structures. 2007-01-26, ∼9740🔥, 0💬

DomainFinder
It is an interactive program for the determination and characterization of dynamical domains in proteins. Its key features are computational efficiency: even large proteins can be analyzed using a desk computer in a few minutes ease of use: a state-of-the 2007-01-26, ∼9731🔥, 0💬

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