EDPDB

BioTechnology Bug Tracking Database Administrator Internet Others Software Developer Software QA Software Vendors Travel Webmaster

Home Hot About Collections Index RSS Atom Suggest

Tester Developer DBA Windows JAR DLL Files Certificates RegEx Links Q&A Biotech DOI Phones Travel FAQ Forum

Home > BioTechnology > Tools

EDPDB

🔖

EdPDB is a program to manipulate and extract information from Brookhaven Protein Databank (PDB) format coordinate file(s) of three-dimensional protein structures.

http://omega.omrf.ouhsc.edu/zhangc/edpdb/edpdb.html

✍: FYIcenter.com

2007-01-26, 9979🔥, 0💬

Cn3D
Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service. 2007-01-26, ≈10🔥, 0💬

Garlic
It is a free molecular visualization program, protein structure, DNA structure, PDB, molecular rendering, biological macromolecule, unix, linux, free software download, open source software. 2007-01-26, ≈10🔥, 0💬

GROMACS
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 2007-01-26, ≈10🔥, 0💬

GRAMM
GRAMM is a program for protein docking. To predict the structure of a complex, it requires only the atomic coordinates of the two molecules (no information about the binding sites is needed). The program performs an exhaustive 6-dimensional search through 2007-01-26, ≈10🔥, 0💬

Easy Winbabel
It's a program for chemists and physicists dealing with molecular modeling. It uses the well known BABEL program as basis and provides a windows interface. The zip file includes BABEL ver 1.6. 2007-01-26, ≈10🔥, 0💬

Dang
Dang reads coordinates from a Protein DataBank (PDB) molecular structure file and generates a table of several useful geometric measurements for each residue or base. In its most basic form, it writes out dihedral angles (phi, psi, chi) hence the name. Th 2007-01-26, ≈10🔥, 0💬

Ghemical
Ghemical is a computational chemistry software package released under the GNU GPL. Geometry optimization, molecular dynamics and some visualization tools are currently available. If quantum-mechanical calculations are needed, Ghemical can be directly link 2007-01-26, ≈10🔥, 0💬

EDPDB
EdPDB is a program to manipulate and extract information from Brookhaven Protein Databank (PDB) format coordinate file(s) of three-dimensional protein structures. 2007-01-26, ∼9980🔥, 0💬

DomainFinder
It is an interactive program for the determination and characterization of dynamical domains in proteins. Its key features are computational efficiency: even large proteins can be analyzed using a desk computer in a few minutes ease of use: a state-of-the 2007-01-26, ∼9911🔥, 0💬

BioTechnology Bug Tracking Database Administrator Internet Others Software Developer Software QA Software Vendors Travel Webmaster

Home Hot About Collections Index RSS Atom Suggest

Tester Developer DBA Windows JAR DLL Files Certificates RegEx Links Q&A Biotech DOI Phones Travel FAQ Forum

All rights in the contents of this web site are reserved by the individual author. FYIcenter.com does not guarantee the truthfulness, accuracy, or reliability of any contents.