FASTA Introduction

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FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achie

http://www.ebi.ac.uk/fasta33/index.html

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NCBI - Basic Local Alignment Search Tool (BLAST)
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infe 2007-01-27, ∼9237🔥, 0💬

EMBOSS Home Page
EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a 2007-01-27, ∼8202🔥, 0💬

What is COPIA
COnsensus Pattern Identification and Analysis - A software to find motif for protein family classification; Implemented by ChengZhi Liang in 2001 at University of Waterloo 2006-11-09, ∼8180🔥, 0💬

PatternHunter
PatternHunter is a general-purpose homology search tool, based on innovative and proprietary technologies. It provides all the tools necessary for fast and sensitive homology search in all flavors including DNA-DNA, Protein-Protein, translated DNA-protein 2006-11-09, ∼8161🔥, 0💬

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PEAKS
PEAKS is an elegant software solution for peptide sequencing and protein identification from tandem mass spectrometry (MS/MS) data. PEAKS is renowned for its ability to provide the sequence of a peptide without the aid of a protein sequence database -- a 2006-11-09, ∼8007🔥, 0💬

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RAPTOR
Structure-based drug design approaches have been an integral part of the drug discovery process and have made a profound contribution at many pharmaceutical companies. As more and more structural information becomes available, a variety of practical struc 2006-11-09, ∼7883🔥, 0💬

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