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Sequin
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissio 2007-01-27, ≈28🔥, 0💬

PhyloDraw
PhyloDraw is a drawing tool for creating phylogenetic trees. It supports various kinds of multialignment programs (Dialign2, Clustal-W, Phylip format, and pairwise distance matrix) and visualizes various kinds of tree diagrams. 2007-01-27, ≈13🔥, 0💬

FTDock
FTDock ( Fourier Transform Dock ) performs rigid-body docking on two biomolecules in order to predict their correct binding geometry. FTDock outputs multiple predictions that can be screened using biochemical information.beginners and experts. VigyaanCD i 2007-01-26, ≈11🔥, 0💬

ArgusLab
It is an incredible molecular modeling, graphics, and drug design program. 2007-01-26, ≈11🔥, 0💬

Glimmer HMM
A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolated Markov models for evaluating the coding regions. 2007-01-27, ≈11🔥, 0💬

Biodesigner
It is a molecular modeling and visualization program for personal computers which is capable of creating homologous models of proteins, evaluate, and refine the models. 2007-01-26, ≈11🔥, 0💬

Glimmer
A system for finding genes in microbial DNA, especially the genomes of bacteria and archaea.Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DN 2007-01-27, ≈11🔥, 0💬

pDRAW
pDRAW32 is being developed as a free time hobby project. It is far from finished, but as it has reached a point where it could be helpful for many labs, it is now available to the scientific community. 2007-01-27, ≈11🔥, 0💬

Hex
Hex is an interactive protein docking and molecular superposition program. Currently, Hex understands protein and DNA structures in PDB format. 2007-01-26, ≈11🔥, 0💬

Chromas
It will display and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files which the analysis programs for ALF, Li-Cor and Visible Genetics OpenGene sequencers can create. 2007-01-27, ≈11🔥, 0💬

FastA
The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a given sequence. 2007-01-27, ≈11🔥, 0💬

LOOPP
LOOPP is a fold recognition program based on the collection of numerous signals, merging them into a single score, and generating atomic coordinates based on an alignment into a homologue template structure. 2007-01-26, ≈11🔥, 0💬

BioJava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating sequences, file parsers, DAS client and server suport, access to BioSQL and Ensembl databases, and powerful analy 2007-01-26, ≈10🔥, 0💬

Genome Channel
Online Visualization Tools - We provide bioinformatics and analytic services and resources to collaborators, predict prospective gene and protein models for analysis, provide user services for the general community, including computer-annotated genomes in 2007-02-06, ≈10🔥, 0💬

Chem2Pac
Chem2Pac is intended to be a kind of computational chemistry integrator, which has a multiple document interface, a molecular rendering utility, and allows the manipulation of various files. 2007-01-26, ≈10🔥, 0💬

Cellware
Cellware has been designed to conduct modeling and simulation of gene regulatory and metabolic pathways and also offer an integrated environment for diverse mathematical representations, parameter estimation and optimization. In addition, a user-friendly 2007-01-27, ≈10🔥, 0💬

Match sequence against PROSITE
Search your query sequence for protein motifs, rapidly compare your query protein sequence against all patterns stored in the PROSITE pattern database and determine what the function of an uncharacterised protein is. This tool requires a protein sequence 2007-02-06, ≈10🔥, 0💬

NAMD
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platfo 2007-01-26, ≈10🔥, 0💬

X3DNA
3DNA is a versatile package for analyzing and rebuilding three-dimensional nucleic acid structures, based on a standard reference frame. 2007-01-27, ≈10🔥, 0💬

CytoScape
Cytoscape is a visualization platform for use with molecular interaction networks. Interaction data can be integrated with other state data such as gene expression profiles. The input to Cytoscape includes lists of interaction pairs, and tab/space delimit 2007-01-27, ≈10🔥, 0💬

Pratt - a pattern discovery tool
The Pratt program is able to discover patterns conserved in sets of unaligned protein sequences. 2007-02-06, ≈10🔥, 0💬

Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. 2007-01-27, ≈10🔥, 0💬

The PSA Protein Structure Prediction Server
The Protein Sequence Analysis (PSA) server predicts probable secondary structures and folding classes for a given amino acid sequence. 2007-02-06, ≈10🔥, 0💬

Swiss-PdbViewer
TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA file) and saving a single frame as a PDB file. 2007-01-26, ≈10🔥, 0💬

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