Sequin

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Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissio

http://www.ncbi.nlm.nih.gov/Sequin/

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2007-01-27, 28🔥, 0💬

Sequin
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissio 2007-01-27, ≈28🔥, 0💬

Glimmer HMM
A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolated Markov models for evaluating the coding regions. 2007-01-27, ≈11🔥, 0💬

Glimmer
A system for finding genes in microbial DNA, especially the genomes of bacteria and archaea.Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DN 2007-01-27, ≈11🔥, 0💬

pDRAW
pDRAW32 is being developed as a free time hobby project. It is far from finished, but as it has reached a point where it could be helpful for many labs, it is now available to the scientific community. 2007-01-27, ≈11🔥, 0💬

MUMmer
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. 2007-01-27, ≈10🔥, 0💬

Glimmer M
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programming algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. The d 2007-01-27, ≈10🔥, 0💬

Staden
The Staden Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DNA/protein sequence analysis (spin). 2007-01-27, ∼9930🔥, 0💬

BioEdit
BioEdit is a full integrated sequence/alignment editor. Performs translations, phylogenetic analysis, clustalw alignments, ABI trace analysis, RNA comparative analysis and BLAST searches. 2007-01-27, ∼9923🔥, 0💬

Circle
Infer RNA secondary structure using the comparative method. 2007-01-27, ∼9579🔥, 0💬

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