Reduce

🔖

Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met methyls, Asn and Gln sidechain amides, and His rings. B

http://kinemage.biochem.duke.edu/software/reduce.php

✍: FYIcenter.com

2007-01-26, 10🔥, 0💬

NAMD
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platfo 2007-01-26, ≈10🔥, 0💬

CytoScape
Cytoscape is a visualization platform for use with molecular interaction networks. Interaction data can be integrated with other state data such as gene expression profiles. The input to Cytoscape includes lists of interaction pairs, and tab/space delimit 2007-01-27, ≈10🔥, 0💬

Swiss-PdbViewer
TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA file) and saving a single frame as a PDB file. 2007-01-26, ≈10🔥, 0💬

Swiss-PdbViewer
Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant 2007-01-26, ≈10🔥, 0💬

VEGA
VEGA was originally developed to create a bridge between most of the molecular software packages only, but in the years, enhancing its features, it's evolved to a complete molecular modeling suite. 2007-01-26, ≈10🔥, 0💬

NOC
It is a free program for protein structure model-building, visualization, validation and analysis. 2007-01-26, ≈10🔥, 0💬

Open Babel
Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry. 2007-01-26, ≈10🔥, 0💬

Rasmol
Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules. 2007-01-26, ≈10🔥, 0💬

Reduce
Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met methyls, Asn and Gln sidechain amides, and His rings. B 2007-01-26, ≈10🔥, 0💬

All rights in the contents of this web site are reserved by the individual author. FYIcenter.com does not guarantee the truthfulness, accuracy, or reliability of any contents.