KineMage

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A "kinemage" (kinetic image) is a scientific illustration presented as an interactive computer display. Operations on the displayed kinemage respond immediately: the entire image can be rotated in real time, parts of the display can be turned on or off, p

http://kinemage.biochem.duke.edu/kinemage/magepage.php

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2007-01-26, 9104🔥, 0💬

LOOPP
LOOPP is a fold recognition program based on the collection of numerous signals, merging them into a single score, and generating atomic coordinates based on an alignment into a homologue template structure. 2007-01-26, ≈10🔥, 0💬

NAMD
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platfo 2007-01-26, ≈10🔥, 0💬

MOIL
MOIL is a molecular modeling software, which is in the public domain, and is written in the group of Ron Elber. Available features, such as energy calculations, minimization and calculations of classical trajectories. Graphic User Interface for a wide ran 2007-01-26, ≈10🔥, 0💬

MOLMOL
MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. 2007-01-26, ≈10🔥, 0💬

GROMACS
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 2007-01-26, ≈10🔥, 0💬

GRAMM
GRAMM is a program for protein docking. To predict the structure of a complex, it requires only the atomic coordinates of the two molecules (no information about the binding sites is needed). The program performs an exhaustive 6-dimensional search through 2007-01-26, ∼9955🔥, 0💬

Molscript
A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations 2007-01-26, ∼9751🔥, 0💬

Ghemical
Ghemical is a computational chemistry software package released under the GNU GPL. Geometry optimization, molecular dynamics and some visualization tools are currently available. If quantum-mechanical calculations are needed, Ghemical can be directly link 2007-01-26, ∼9717🔥, 0💬

gOpenMol
gOpenMol graphics interface to the OpenMol and can be used for the analysis and display of molecular dynamics trajectories and the display of molecular orbital's, electron densities and electrostatic potentials. 2007-01-26, ∼9506🔥, 0💬

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