8994
:-)

VEGA

VEGA was originally developed to create a bridge between most of the molecular software packages only, but in the years, enhancing its features, it's evolved to a complet...

Submitted: 2007-01-26

9066
:-)

Swiss-PdbViewer

TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA f...

Submitted: 2007-01-26

9057
:-)

Swiss-PdbViewer

Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order...

Submitted: 2007-01-26

8491
:-)

Reduce

Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orie...

Submitted: 2007-01-26

8461
:-)

Raster3D

Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric s...

Submitted: 2007-01-26

8743
:-)

Rasmol

Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules....                                                    

Submitted: 2007-01-26

8734
:-)

Open Babel

Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molec...

Submitted: 2007-01-26

8850
:-)

NOC

It is a free program for protein structure model-building, visualization, validation and analysis....                                                                        

Submitted: 2007-01-26

9353
:-)

NAMD

NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm+...

Submitted: 2007-01-26

8492
:-)

Molscript

A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations...                                                        

Submitted: 2007-01-26

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

26618
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27