Link Directory - FYI Center
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9340 VEGA was originally developed to create a bridge between most of the molecular software packages only, but in the years, enhancing its features, it's evolved to a complet... Submitted: 2007-01-26 9423 TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA f... Submitted: 2007-01-26 9403 Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order... Submitted: 2007-01-26 8834 Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orie... Submitted: 2007-01-26 8794 Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric s... Submitted: 2007-01-26 9105 Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules.... Submitted: 2007-01-26 9076 Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molec... Submitted: 2007-01-26 9181 It is a free program for protein structure model-building, visualization, validation and analysis.... Submitted: 2007-01-26
9692 NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm+... Submitted: 2007-01-26 8834 A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations... Submitted: 2007-01-26
32767 More on Structure Data Format (SDF) Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi... Submitted: 2006-03-28 27053 Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin... Submitted: 2007-01-27
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