8462
:-)

Osprey

Application for graphically representing physical and genetic biological interactions; is coupled with the General Repository of Interaction Datasets (The GRID); availabl...

Submitted: 2007-01-27

8464
:-)

InterViewer

InterWeaver is a tool employing two approaches to detect potential protein interactions by searching for and interpreting evidence available from on-line databases. The f...

Submitted: 2007-01-27

8500
:-)

Graphviz

Graph layout software for protein network....                                                                                                                                

Submitted: 2007-01-27

8474
:-)

CNplot

CNplot is a network visualization tool that can be used for large-scale networks, as long as they are pre-clustered....                                                      

Submitted: 2007-01-27

8451
:-)

ANTHEPROT

ANTHEPROT (ANalyse THE PROTeins) is to integrate into a single package most of the methods designed for protein sequence analysis....                                        

Submitted: 2007-01-27

8731
:-)

ADVICE

Automated Detection and Validation of Interaction by Co-Evolution (ADVICE) takes a list of protein sequences or sequence pairs as input and uses orthologous sequences to ...

Submitted: 2007-01-27

8977
:-)

Gepasi

Gepasi is a software package for modeling biochemical systems. It simulates the kinetics of systems of biochemical reactions and provides a number of tools to fit models ...

Submitted: 2007-01-27

9123
:-)

E-Cell 3

E-Cell Project is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technol...

Submitted: 2007-01-27

9219
:-)

CytoScape

Cytoscape is a visualization platform for use with molecular interaction networks. Interaction data can be integrated with other state data such as gene expression profil...

Submitted: 2007-01-27

9253
:-)

Cellware

Cellware has been designed to conduct modeling and simulation of gene regulatory and metabolic pathways and also offer an integrated environment for diverse mathematical ...

Submitted: 2007-01-27

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

26600
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27