8128
:-)

HMMER

A profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus....                        

Submitted: 2007-01-27

7948
:-)

GeneTree

GeneTree is an experimental program for comparing gene and species trees....                                                                                                

Submitted: 2007-01-27

8153
:-)

GeneDoc

GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support....                                              

Submitted: 2007-01-27

8219
:-)

FreeTree

Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.)...                                  

Submitted: 2007-01-27

9000
:-)

FastA

The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a giv...

Submitted: 2007-01-27

8026
:-)

Dambe

It is a general-purpose package for DNA and protein sequence phylogenies, and also gene frequencies....                                                                      

Submitted: 2007-01-27

7997
:-)

Circle

Infer RNA secondary structure using the comparative method....                                                                                                              

Submitted: 2007-01-27

8256
:-)

BioEdit

BioEdit is a full integrated sequence/alignment editor. Performs translations, phylogenetic analysis, clustalw alignments, ABI trace analysis, RNA comparative analysis an...

Submitted: 2007-01-27

8374
:-)

Staden

The Staden Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DNA/protein sequence analysis (spin)....        

Submitted: 2007-01-27

26223
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

29034
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

26223
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27