9022
:-)

Sequence Manipulation Suite

The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by m...

Submitted: 2007-01-27

8803
:-)

Readseq

Reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences....                                                                    

Submitted: 2007-01-27

9000
:-)

RNA DRAW

It is an integrated program for RNA secondary structure calculation and analysis....                                                                                        

Submitted: 2007-01-27

11895
:-)

PhyloDraw

PhyloDraw is a drawing tool for creating phylogenetic trees. It supports various kinds of multialignment programs (Dialign2, Clustal-W, Phylip format, and pairwise distan...

Submitted: 2007-01-27

8917
:-)

PHYLIP

PHYLIP is a free package of programs for inferring phylogenies....                                                                                                          

Submitted: 2007-01-27

8976
:-)

MFold

Mfold is an RNA and DNA folding package....                                                                                                                                  

Submitted: 2007-01-27

8758
:-)

Mega3

MEGA is an integrated tool for automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution,...

Submitted: 2007-01-27

8782
:-)

JEMBOSS

Jemboss is developed by the EMBOSS team. The software is free and part of the EMBOSS distribution....                                                                        

Submitted: 2007-01-27

8628
:-)

JalView

Graphical multiple alignment editor. Requires Java Virtual Machine....                                                                                                      

Submitted: 2007-01-27

8604
:-)

HyPhy

It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. HYPHY was designed with maximu...

Submitted: 2007-01-27

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

27075
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27