9092
:-)

Open Babel

Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molec...

Submitted: 2007-01-26

9193
:-)

NOC

It is a free program for protein structure model-building, visualization, validation and analysis....                                                                        

Submitted: 2007-01-26

9706
:-)

NAMD

NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm+...

Submitted: 2007-01-26

8844
:-)

Molscript

A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations...                                                        

Submitted: 2007-01-26

9255
:-)

MOLMOL

MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on ...

Submitted: 2007-01-26

9456
:-)

MOIL

MOIL is a molecular modeling software, which is in the public domain, and is written in the group of Ron Elber. Available features, such as energy calculations, minimizat...

Submitted: 2007-01-26

9572
:-)

LOOPP

LOOPP is a fold recognition program based on the collection of numerous signals, merging them into a single score, and generating atomic coordinates based on an alignment...

Submitted: 2007-01-26

8602
:-)

KineMage

A "kinemage" (kinetic image) is a scientific illustration presented as an interactive computer display. Operations on the displayed kinemage respond immediately: the enti...

Submitted: 2007-01-26

9948
:-)

Hex

Hex is an interactive protein docking and molecular superposition program. Currently, Hex understands protein and DNA structures in PDB format....                          

Submitted: 2007-01-26

9229
:-)

GROMACS

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles....        

Submitted: 2007-01-26

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

27075
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27