Link Directory - FYI Center
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9092 Open Babel is a project designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molec... Submitted: 2007-01-26 9193 It is a free program for protein structure model-building, visualization, validation and analysis.... Submitted: 2007-01-26 9706 NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm+... Submitted: 2007-01-26 8844 A program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations... Submitted: 2007-01-26 9255 MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on ... Submitted: 2007-01-26 9456 MOIL is a molecular modeling software, which is in the public domain, and is written in the group of Ron Elber. Available features, such as energy calculations, minimizat... Submitted: 2007-01-26 9572 LOOPP is a fold recognition program based on the collection of numerous signals, merging them into a single score, and generating atomic coordinates based on an alignment... Submitted: 2007-01-26 8602 A "kinemage" (kinetic image) is a scientific illustration presented as an interactive computer display. Operations on the displayed kinemage respond immediately: the enti... Submitted: 2007-01-26 9948 Hex is an interactive protein docking and molecular superposition program. Currently, Hex understands protein and DNA structures in PDB format.... Submitted: 2007-01-26
9229 GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.... Submitted: 2007-01-26
32767 More on Structure Data Format (SDF) Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi... Submitted: 2006-03-28 27075 Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin... Submitted: 2007-01-27
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