9073
:-)

Gepasi

Gepasi is a software package for modeling biochemical systems. It simulates the kinetics of systems of biochemical reactions and provides a number of tools to fit models ...

Submitted: 2007-01-27

9206
:-)

E-Cell 3

E-Cell Project is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technol...

Submitted: 2007-01-27

9341
:-)

CytoScape

Cytoscape is a visualization platform for use with molecular interaction networks. Interaction data can be integrated with other state data such as gene expression profil...

Submitted: 2007-01-27

9353
:-)

Cellware

Cellware has been designed to conduct modeling and simulation of gene regulatory and metabolic pathways and also offer an integrated environment for diverse mathematical ...

Submitted: 2007-01-27

9083
:-)

VEGA

VEGA was originally developed to create a bridge between most of the molecular software packages only, but in the years, enhancing its features, it's evolved to a complet...

Submitted: 2007-01-26

9151
:-)

Swiss-PdbViewer

TraX (Trajectory eXplorer) is a simple Biodesigner-like program working under Linux and Windows. The program allows reading a protein folding simulation trajectory (TRA f...

Submitted: 2007-01-26

9142
:-)

Swiss-PdbViewer

Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order...

Submitted: 2007-01-26

8582
:-)

Reduce

Reduce is a program for adding hydrogens to a Protein Data Bank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orie...

Submitted: 2007-01-26

8548
:-)

Raster3D

Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric s...

Submitted: 2007-01-26

8814
:-)

Rasmol

Rasmol is a molecular graphics program intended for the visualization of proteins, nucleic acids and small molecules....                                                    

Submitted: 2007-01-26

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

26724
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27