8482
:-)

Mega3

MEGA is an integrated tool for automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution,...

Submitted: 2007-01-27

8476
:-)

JEMBOSS

Jemboss is developed by the EMBOSS team. The software is free and part of the EMBOSS distribution....                                                                        

Submitted: 2007-01-27

8353
:-)

JalView

Graphical multiple alignment editor. Requires Java Virtual Machine....                                                                                                      

Submitted: 2007-01-27

8329
:-)

HyPhy

It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. HYPHY was designed with maximu...

Submitted: 2007-01-27

8562
:-)

HMMER

A profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus....                        

Submitted: 2007-01-27

8379
:-)

GeneTree

GeneTree is an experimental program for comparing gene and species trees....                                                                                                

Submitted: 2007-01-27

8563
:-)

GeneDoc

GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support....                                              

Submitted: 2007-01-27

8622
:-)

FreeTree

Freeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.)...                                  

Submitted: 2007-01-27

9413
:-)

FastA

The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a giv...

Submitted: 2007-01-27

8463
:-)

Dambe

It is a general-purpose package for DNA and protein sequence phylogenies, and also gene frequencies....                                                                      

Submitted: 2007-01-27

32767
:-)

More on Structure Data Format (SDF)

Quick introduction with topic areas below: Details of SDF and other MDL file formats; Sample SDF file; DSSTox SDF files; Encouraging "clean SDF" standards for CRDs; Publi...

Submitted: 2006-03-28

32767
:-)

SD-format

Short but clear explanation of SDF format....                                                                                                                                

Submitted: 2006-03-28

26741
:-)

Sequin

Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handlin...

Submitted: 2007-01-27